Neural Networks Prediction software

Softberry Releases 80 Free Bioinformatics Programs for Immediate Download by Academic Users
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MOUNT KISCO, N.Y.–(BUSINESS WIRE)–Softberry, Inc. announces release of a comprehensive set of biomedical research-oriented software applications for academic users to install and run locally on a limited basis.

The programs, already cited in thousands of scientific publications, are available for Linux and Mac OS platforms and focus primarily on genomic and proteomic research. They include tools for analysis of next generation sequencing data: Accurate spliced alignment of RNA-Seq data to a reference genome (ReadsMap), de novo assembly of transcriptome reads into RNA transcripts (TransSeq), genome assembly (OligoZip) and a software package for SNP analysis (SNP-Toolbox).

Another group of programs facilitates analysis of genomic sequences: alignment of genomes, bacterial and eukaryotic promoter prediction, discovery of functional/regulatory motifs, splice sites identification and gene prediction. EST_map and Prot_map programs, often used in genome annotation pipelines, map entire databases of known mRNA or protein sequences to genome.

Software for protein sequence and structure analysis includes tools for identification of sub-cellular protein location, prosite pattern search, 3D structure comparison, protein structure modeling using molecular dynamic approach and homology modeling.

Source: RNA-Seq Blog

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